Equilibrium free-energy differences at different temperatures from a single set of nonequilibrium transitions.
نویسندگان
چکیده
Crook's fluctuation theorem (CFT) and Jarzynski equality (JE) are effective tools for obtaining free-energy difference ΔF(λ_{A}→λ_{B},T_{0}) through a set of finite-time protocol driven nonequilibrium transitions between two equilibrium states A and B [parametrized by the time-varying protocol λ(t)] at the same temperature T_{0}. Using the generalized dimensionless work function ΔW_{G}, we extend CFT to transitions between two nonequilibrium steady states (NESSs) created by a thermal gradient. We show that it is possible, provided the period over which the transitions occur is sufficiently long, to obtain ΔF(λ_{A}→λ_{B},T_{0}) for different values of T_{0}, using the same set of finite-time transitions between these two NESSs. Our approach thus completely eliminates the need to make new samples for each new T_{0}. The generalized form of JE arises naturally as the average of the exponentiated ΔW_{G}. The results are demonstrated on two test cases: (i) a single particle quartic oscillator having a known closed form ΔF, and (ii) a one-dimensional ϕ^{4} chain. Each system is sampled from the canonical distribution at an arbitrary T^{'} with λ=λ_{A}, then subjected to a temperature gradient between its ends, and after steady state is reached, the protocol change λ_{A}→λ_{B} is effected in time τ, following which ΔW_{G} is computed. The reverse path likewise initiates in equilibrium at T^{'} with λ=λ_{B} and the protocol is time reversed leading to λ=λ_{A} and the reverse ΔW_{G}. Our method is found to be more efficient than either JE or CFT when free-energy differences at multiple T_{0}'s are required for the same system.
منابع مشابه
Springs and speeds in free energy reconstruction from irreversible single-molecule pulling experiments.
The nonequilibrium work relation allows for the calculation of equilibrium free energy differences between states based on the exponential average of accumulated work from irreversible transitions. Here, we compare two distinct approaches of calculating free energy surfaces from unidirectional single-molecule pulling experiments: the stiff spring approximation and the Hummer-Szabo method. First...
متن کاملBayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise.
The Jarzynski equality and the fluctuation theorem relate equilibrium free energy differences to nonequilibrium measurements of the work. These relations extend to single-molecule experiments that have probed the finite-time thermodynamics of proteins and nucleic acids. The effects of experimental error and instrument noise have not been considered previously. Here, we present a Bayesian formal...
متن کاملEquilibrium Sampling From Nonequilibrium Dynamics
We present some applications of an Interacting Particle System (IPS) methodology to the field of Molecular Dynamics. This IPS method allows several simulations of a switched random process to keep closer to equilibrium at each time, thanks to a selection mechanism based on the relative virtual work induced on the system. It is therefore an efficient improvement of usual non-equilibrium simulati...
متن کاملAccuracy and convergence of free energy differences calculated from nonequilibrium switching processes
The molecular-dynamics-based calculation of accurate free energy differences for biomolecular systems is a challenging task. Accordingly, convergence and accuracy of established equilibrium methods has been subject of many studies, often focusing at small test systems. In contrast, the potential of more recently proposed nonequilibrium methods, derived from the Jarzynski and Crooks equalities, ...
متن کاملEquilibrium free energy differences from nonequilibrium computer simulations: Improving convergence by reducing dissipation
Title of dissertation: Equilibrium free energies from nonequilibrium simulations: Improving convergence by reducing dissipation Suriyanarayanan Vaikuntanathan, Doctor of Philosophy, 2011 Dissertation directed by: Professor Christopher Jarzynski Department of Chemistry and Biochemistry Institute for Physical Science and Technology The estimation of equilibrium free energy differences is an impor...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Physical review. E
دوره 94 4-1 شماره
صفحات -
تاریخ انتشار 2016